PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G179800.1
Common NamePOPTR_0006s19350g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 282aa    MW: 32672.4 Da    PI: 8.2203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G179800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.58.5e-26521792128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                         p+G rF+P+d el+++yL+++  g    +e ++ ++d+yk++P++Lp  kv+ + + ++y F++  k + +g rk +  t +g Wk   + 
  Potri.006G179800.1  52 PVGWRFNPSDIELLDYYLRARKYGGGAICEGIFGDFDLYKYDPQNLPqDKVHRHCNgRMYIFTPIYKLHINGARKGKrNTPNGHWKMNSSP 142
                         79*****************9988888777789***************546655555588************99886559************ PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ +g+++g++ +Lvf+++   + +kt+W+m e+rl
  Potri.006G179800.1 143 IPIIENnDGQTIGTRSSLVFFDK---DKRKTRWLMYEFRL 179
                         ***99878999**********43...3358********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-2746203IPR003441NAC domain
PROSITE profilePS5100531.53451204IPR003441NAC domain
PfamPF023653.2E-1552179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSTPISETSE KNCDVDRAMQ SDGEPRRHDQ VREAFRSLST SANWMDWFKF GPVGWRFNPS  60
DIELLDYYLR ARKYGGGAIC EGIFGDFDLY KYDPQNLPQD KVHRHCNGRM YIFTPIYKLH  120
INGARKGKRN TPNGHWKMNS SPIPIIENND GQTIGTRSSL VFFDKDKRKT RWLMYEFRLV  180
DPPTQTIENE GMLDHCVLAV VYRSKEDRLD TATNKNRWSH DYVAHTIGFD EFNSEPKRCH  240
DQVLSDNKEN HSMEQSHRKR KYAQDIGGTS TSNSNSITNF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-175217916140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308423.10.0hypothetical protein POPTR_0006s19350g
TrEMBLB9HBF60.0B9HBF6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s19350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2320334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.13e-19NAC domain containing protein 61